An upgraded ultra-high vacuum magnetron-sputtering system for high-versatility and software-controlled deposition

Magnetron sputtering is a widely used physical vapor deposition technique. Reactive sputtering is used for the deposition of, e.g, oxides, nitrides and carbides. In fundamental research, versatility is essential when designing or upgrading a deposition chamber. Furthermore, automated deposition systems are the norm in industrial production, but relatively uncommon in laboratory-scale systems used primarily for fundamental research. Combining automatization and computerized control with the required versatility for fundamental research constitutes a challenge in designing, developing, and upgrading laboratory deposition systems. The present article provides a detailed description of the design of a lab-scale deposition chamber for magnetron sputtering used for the deposition of metallic, oxide, nitride and oxynitride films with automated controls, dc or pulsed bias, and combined with a coil to enhance the plasma density near the substrate. LabVIEW software (provided as Supplementary Information) has been developed for a high degree of computerized or automated control of hardware and processes control and logging of process details.Comment: 17 pages, 8 figure

Wood smoke particles from different combustion phases induce similar pro-inflammatory effects in a co-culture of monocyte and pneumocyte cell lines

Background Exposure to particulate matter (PM) has been linked to several adverse cardiopulmonary effects, probably via biological mechanisms involving inflammation. The pro-inflammatory potential of PM depends on the particles’ physical and chemical characteristics, which again depend on the emitting source. Wood combustion is a major source of ambient air pollution in Northern countries during the winter season. The overall aim of this study was therefore to investigate cellular responses to wood smoke particles (WSPs) collected from different phases of the combustion cycle, and from combustion at different temperatures. Results WSPs from different phases of the combustion cycle induced very similar effects on pro-inflammatory mediator release, cytotoxicity and cell number, whereas WSPs from medium-temperature combustion were more cytotoxic than WSPs from high-temperature incomplete combustion. Furthermore, comparisons of effects induced by native WSPs with the corresponding organic extracts and washed particles revealed that the organic fraction was the most important determinant for the WSP-induced effects. However, the responses induced by the organic fraction could generally not be linked to the content of the measured polycyclic aromatic hydrocarbons (PAHs), suggesting that also other organic compounds were involved. Conclusion The toxicity of WSPs seems to a large extent to be determined by stove type and combustion conditions, rather than the phase of the combustion cycle. Notably, this toxicity seems to strongly depend on the organic fraction, and it is probably associated with organic components other than the commonly measured unsubstituted PAHs

Digital twins to personalize medicine

Personalized medicine requires the integration and processing of vast amounts of data. Here, we propose a solution to this challenge that is based on constructing Digital Twins. These are high-resolution models of individual patients that are computationally treated with thousands of drugs to find the drug that is optimal for the patient

Treatable traits in the European U-BIOPRED adult asthma cohorts

Letter to the edito

Sputum proteomics and airway cell transcripts of current and ex-smokers with severe asthma in U-BIOPRED: an exploratory analysis

Background: Severe asthma patients with a significant smoking history have airflow obstruction with reported neutrophilia. We hypothesise that multi-omic analysis will enable the definition of smoking and ex-smoking severe asthma molecular phenotypes. Methods: The U-BIOPRED severe asthma patients containing current-smokers (CSA), exsmokers (ESA), non-smokers (NSA) and healthy non-smokers (NH) was examined. Blood and sputum cell counts, fractional exhaled nitric oxide and spirometry were obtained. Exploratory proteomic analysis of sputum supernatants and transcriptomic analysis of bronchial brushings, biopsies and sputum cells was performed. Results: Colony stimulating factor (CSF)2 protein levels were increased in CSA sputum supernatants with azurocidin 1, neutrophil elastase and CXCL8 upregulated in ESA. Phagocytosis and innate immune pathways were associated with neutrophilic inflammation in ESA. Gene Set Variation Analysis of bronchial epithelial cell transcriptome from CSA showed enrichment of xenobiotic metabolism, oxidative stress and endoplasmic reticulum stress compared to other groups. CXCL5 and matrix metallopeptidase 12 genes were upregulated in ESA and the epithelial protective genes, mucin 2 and cystatin SN, were downregulated. Conclusion: Despite little difference in clinical characteristics, CSA were distinguishable from ESA subjects at the sputum proteomic level with CSA having increased CSF2 expression and ESA patients showed sustained loss of epithelial barrier processes

Identification and management of linkage zones for grizzly bears between the large blocks of public land in the Northern Rocky Mountains

The fragmentation of carnivore habitat in the Rocky Mountains on both sides of the U.S.-Canada border is an ongoing threat to the survival and recovery of these populations. Human developments are the cause of this fragmentation. Major developments causing fragmentation include private land conversion into homesites and highway construction and improvement. If carnivores such as grizzly bears (Ursus arctos horribilis), wolves, (Canis lupus), wolverines (Gulo gulo), lynx (Lynx lynx), and fishers (Martes pennanti) are to survive and recover to healthy population levels in the Rocky Mountains, the issue of fragmentation must be addressed in a proactive and effective manner

Rethinking Arsenate Coordination at the Surface of Goethite

A fundamental precept of geochemistry is that arsenate coordinates at mineral surfaces in a predominately bridging-bidentate fashion. We show that this is incorrect for the model system, arsenate adsorbed at the surface of goethite (alpha-FeOOH), using a combination of XRD, EXAFS, and IR spectroscopic results. We report the crystal structure of pentaamminecobalt(III) arsenate, which consists of monodentate-coordinated metal-arsenato complexes that have Co-As distances of only 3.25 angstrom. This result implies that metal-arsenic distances are not diagnostic for the coordination mode of arsenate. We show that the K-edge EXAFS spectra of pentaamminecobalt(ill) arsenate and arsenate-goethite surface complexes are strikingly similar, which suggests that arsenate could be coordinated at the goethite surface in a monodentate fashion. Refinements of the k(3)-weighted EXAFS spectra of arsenate adsorbed on goethite results in values of CNAs-Fe between 0.8-1.1 (+/- 0.7), and there is no evidence that the coordination mode of arsenate changes as a function of pH or arsenate surface coverage. We report IR spectra from the first simultaneous IR and potentiometric titration of arsenate adsorbed on deuterated goethite (alpha-FeOOD) in D2O, and we show for the first time the As-O stretching bands of arsenate-goethite surface complexes. We deduce that arsenate-goethite surface complexes are un-, singly, or doubly protonated, depending on pH, from a principal component analysis of the As-O stretching region and an interpretation of the Type-B OH stretching region. In summary, our cumulative results show that arsenate coordinates at the water-goethite interface in a predominately monodentate fashion. Furthermore, we find no evidence for bridging-bidentate coordination, which is a finding that impacts oxoanion bioavailability and challenges theories of mineral dissolution and surface complexation